The EDML format to exchange energy profiles of protein molecular structures

Dariusz Mrozek; Bozena Małysiak-Mrozek; Stanisław Kozielski; Sylwia Górczyńska-Kosiorz

doi:10.1007/978-3-642-04070-2_17

The EDML format to exchange energy profiles of protein molecular structures

Dariusz Mrozek
, Bozena Małysiak-Mrozek
, Stanisław Kozielski
, Sylwia Górczyńska-Kosiorz

Medical University of Silesia in Katowice

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Citations (Scopus)

Abstract

The Energy Distribution Markup Language (EDML) is an XML-based format that we have designed and developed to exchange protein structure energy profiles between many computers and users. Energy profiles that are distributions of various potential energies over consecutive atoms in protein molecular structures can be downloaded from the Energy Distribution Data Bank (EDB, http://edb.aei.polsl.pl) in the EDML format. In the paper, we describe the purpose of the EDML, a possible use of energy profiles, and internal structure of documents created in the EDML format.

Original language	English
Title of host publication	Emerging Intelligent Computing Technology and Applications - 5th International Conference on Intelligent Computing, ICIC 2009, Proceedings
Publisher	Springer Verlag
Pages	146-157
Number of pages	12
ISBN (Print)	3642040691, 9783642040696
DOIs	https://doi.org/10.1007/978-3-642-04070-2_17
Publication status	Published - 2009
Event	5th International Conference on Intelligent Computing, ICIC 2009 - Ulsan, Korea, Republic of Duration: 16 Sept 2009 → 19 Sept 2009

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	5754 LNCS
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	5th International Conference on Intelligent Computing, ICIC 2009
Country/Territory	Korea, Republic of
City	Ulsan
Period	16/09/09 → 19/09/09

Keywords

Bioinformatics
Databases
Energy profiles
Protein structure
XML

ASJC Scopus subject areas

Theoretical Computer Science
General Computer Science

Access to Document

10.1007/978-3-642-04070-2_17

Cite this

Mrozek, D., Małysiak-Mrozek, B., Kozielski, S., & Górczyńska-Kosiorz, S. (2009). The EDML format to exchange energy profiles of protein molecular structures. In Emerging Intelligent Computing Technology and Applications - 5th International Conference on Intelligent Computing, ICIC 2009, Proceedings (pp. 146-157). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 5754 LNCS). Springer Verlag. https://doi.org/10.1007/978-3-642-04070-2_17

Mrozek, Dariusz ; Małysiak-Mrozek, Bozena ; Kozielski, Stanisław et al. / The EDML format to exchange energy profiles of protein molecular structures. Emerging Intelligent Computing Technology and Applications - 5th International Conference on Intelligent Computing, ICIC 2009, Proceedings. Springer Verlag, 2009. pp. 146-157 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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title = "The EDML format to exchange energy profiles of protein molecular structures",

abstract = "The Energy Distribution Markup Language (EDML) is an XML-based format that we have designed and developed to exchange protein structure energy profiles between many computers and users. Energy profiles that are distributions of various potential energies over consecutive atoms in protein molecular structures can be downloaded from the Energy Distribution Data Bank (EDB, http://edb.aei.polsl.pl) in the EDML format. In the paper, we describe the purpose of the EDML, a possible use of energy profiles, and internal structure of documents created in the EDML format.",

keywords = "Bioinformatics, Databases, Energy profiles, Protein structure, XML",

author = "Dariusz Mrozek and Bozena Ma{\l}ysiak-Mrozek and Stanis{\l}aw Kozielski and Sylwia G{\'o}rczy{\'n}ska-Kosiorz",

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doi = "10.1007/978-3-642-04070-2\_17",

language = "English",

isbn = "3642040691",

series = "Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)",

publisher = "Springer Verlag",

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booktitle = "Emerging Intelligent Computing Technology and Applications - 5th International Conference on Intelligent Computing, ICIC 2009, Proceedings",

address = "Germany",

note = "5th International Conference on Intelligent Computing, ICIC 2009 ; Conference date: 16-09-2009 Through 19-09-2009",

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Mrozek, D , Małysiak-Mrozek, B, Kozielski, S & Górczyńska-Kosiorz, S 2009, The EDML format to exchange energy profiles of protein molecular structures. in Emerging Intelligent Computing Technology and Applications - 5th International Conference on Intelligent Computing, ICIC 2009, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 5754 LNCS, Springer Verlag, pp. 146-157, 5th International Conference on Intelligent Computing, ICIC 2009, Ulsan, Korea, Republic of, 16/09/09. https://doi.org/10.1007/978-3-642-04070-2_17

The EDML format to exchange energy profiles of protein molecular structures. / Mrozek, Dariusz ; Małysiak-Mrozek, Bozena; Kozielski, Stanisław et al.
Emerging Intelligent Computing Technology and Applications - 5th International Conference on Intelligent Computing, ICIC 2009, Proceedings. Springer Verlag, 2009. p. 146-157 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 5754 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

TY - GEN

T1 - The EDML format to exchange energy profiles of protein molecular structures

AU - Mrozek, Dariusz

AU - Małysiak-Mrozek, Bozena

AU - Kozielski, Stanisław

AU - Górczyńska-Kosiorz, Sylwia

PY - 2009

Y1 - 2009

N2 - The Energy Distribution Markup Language (EDML) is an XML-based format that we have designed and developed to exchange protein structure energy profiles between many computers and users. Energy profiles that are distributions of various potential energies over consecutive atoms in protein molecular structures can be downloaded from the Energy Distribution Data Bank (EDB, http://edb.aei.polsl.pl) in the EDML format. In the paper, we describe the purpose of the EDML, a possible use of energy profiles, and internal structure of documents created in the EDML format.

AB - The Energy Distribution Markup Language (EDML) is an XML-based format that we have designed and developed to exchange protein structure energy profiles between many computers and users. Energy profiles that are distributions of various potential energies over consecutive atoms in protein molecular structures can be downloaded from the Energy Distribution Data Bank (EDB, http://edb.aei.polsl.pl) in the EDML format. In the paper, we describe the purpose of the EDML, a possible use of energy profiles, and internal structure of documents created in the EDML format.

KW - Bioinformatics

KW - Databases

KW - Energy profiles

KW - Protein structure

KW - XML

UR - https://www.scopus.com/pages/publications/70350430488

U2 - 10.1007/978-3-642-04070-2_17

DO - 10.1007/978-3-642-04070-2_17

M3 - Conference contribution

AN - SCOPUS:70350430488

SN - 3642040691

SN - 9783642040696

T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

SP - 146

EP - 157

BT - Emerging Intelligent Computing Technology and Applications - 5th International Conference on Intelligent Computing, ICIC 2009, Proceedings

PB - Springer Verlag

T2 - 5th International Conference on Intelligent Computing, ICIC 2009

Y2 - 16 September 2009 through 19 September 2009

ER -

Mrozek D , Małysiak-Mrozek B, Kozielski S, Górczyńska-Kosiorz S. The EDML format to exchange energy profiles of protein molecular structures. In Emerging Intelligent Computing Technology and Applications - 5th International Conference on Intelligent Computing, ICIC 2009, Proceedings. Springer Verlag. 2009. p. 146-157. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-642-04070-2_17

The EDML format to exchange energy profiles of protein molecular structures

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