Signal transduction simulation in nanoprocesses using distributed database environment

Bozena Małysiak; Dariusz Mrozek; Stanisław Kozielski; Lech Znamirowski

Signal transduction simulation in nanoprocesses using distributed database environment

Bozena Małysiak
, Dariusz Mrozek
, Stanisław Kozielski
, Lech Znamirowski

Silesian University of Technology

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

4 Citations (Scopus)

Abstract

Signal transduction executed in the signal cascades is the common term used to define a divers biochemical mechanisms that regulate processes in the nanonetworks. The signal cascades existing in the different type of cells (for selected processes) can be retrieved from the biochemical research available in the specialized databases. In the paper, the process of simulation of the signal transduction in bio-nanoprocesses using the distributed database environment is presented. Selected biological examples illustrate the complexity of the analysis process. The paper shows the analysis of the cascades' fusions processes with the use of the Petri nets, conformation switching basing on the molecular mechanics approach and similarity searching using the approximate retrieval methods.

Original language	English
Title of host publication	Proceedings of the Fifth IASTED International Conference on Modelling, Simulation, and Optimization
Pages	17-22
Number of pages	6
Publication status	Published - 2005
Event	5th IASTED International Conference on Modelling, Simulation, and Optimization - Oranjestad, Aruba Duration: 29 Aug 2005 → 31 Aug 2005

Publication series

Name	Proceedings of the IASTED International Conference on Modelling, Simulation, and Optimization
Volume	2005

Conference

Conference	5th IASTED International Conference on Modelling, Simulation, and Optimization
Country/Territory	Aruba
City	Oranjestad
Period	29/08/05 → 31/08/05

Keywords

Distributed databases
Molecular nanotechnology
Signal transduction

ASJC Scopus subject areas

Software
Modeling and Simulation
Computer Science Applications

Cite this

Małysiak, B., Mrozek, D., Kozielski, S., & Znamirowski, L. (2005). Signal transduction simulation in nanoprocesses using distributed database environment. In Proceedings of the Fifth IASTED International Conference on Modelling, Simulation, and Optimization (pp. 17-22). (Proceedings of the IASTED International Conference on Modelling, Simulation, and Optimization; Vol. 2005).

Małysiak, Bozena ; Mrozek, Dariusz ; Kozielski, Stanisław et al. / Signal transduction simulation in nanoprocesses using distributed database environment. Proceedings of the Fifth IASTED International Conference on Modelling, Simulation, and Optimization. 2005. pp. 17-22 (Proceedings of the IASTED International Conference on Modelling, Simulation, and Optimization).

@inproceedings{14e061a5216047ec93e8864f98eb437b,

title = "Signal transduction simulation in nanoprocesses using distributed database environment",

abstract = "Signal transduction executed in the signal cascades is the common term used to define a divers biochemical mechanisms that regulate processes in the nanonetworks. The signal cascades existing in the different type of cells (for selected processes) can be retrieved from the biochemical research available in the specialized databases. In the paper, the process of simulation of the signal transduction in bio-nanoprocesses using the distributed database environment is presented. Selected biological examples illustrate the complexity of the analysis process. The paper shows the analysis of the cascades' fusions processes with the use of the Petri nets, conformation switching basing on the molecular mechanics approach and similarity searching using the approximate retrieval methods.",

keywords = "Distributed databases, Molecular nanotechnology, Signal transduction",

author = "Bozena Ma{\l}ysiak and Dariusz Mrozek and Stanis{\l}aw Kozielski and Lech Znamirowski",

year = "2005",

language = "English",

isbn = "0889865264",

series = "Proceedings of the IASTED International Conference on Modelling, Simulation, and Optimization",

pages = "17--22",

booktitle = "Proceedings of the Fifth IASTED International Conference on Modelling, Simulation, and Optimization",

note = "5th IASTED International Conference on Modelling, Simulation, and Optimization ; Conference date: 29-08-2005 Through 31-08-2005",

}

Małysiak, B , Mrozek, D, Kozielski, S & Znamirowski, L 2005, Signal transduction simulation in nanoprocesses using distributed database environment. in Proceedings of the Fifth IASTED International Conference on Modelling, Simulation, and Optimization. Proceedings of the IASTED International Conference on Modelling, Simulation, and Optimization, vol. 2005, pp. 17-22, 5th IASTED International Conference on Modelling, Simulation, and Optimization, Oranjestad, Aruba, 29/08/05.

Signal transduction simulation in nanoprocesses using distributed database environment. / Małysiak, Bozena ; Mrozek, Dariusz; Kozielski, Stanisław et al.
Proceedings of the Fifth IASTED International Conference on Modelling, Simulation, and Optimization. 2005. p. 17-22 (Proceedings of the IASTED International Conference on Modelling, Simulation, and Optimization; Vol. 2005).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

TY - GEN

T1 - Signal transduction simulation in nanoprocesses using distributed database environment

AU - Małysiak, Bozena

AU - Mrozek, Dariusz

AU - Kozielski, Stanisław

AU - Znamirowski, Lech

PY - 2005

Y1 - 2005

N2 - Signal transduction executed in the signal cascades is the common term used to define a divers biochemical mechanisms that regulate processes in the nanonetworks. The signal cascades existing in the different type of cells (for selected processes) can be retrieved from the biochemical research available in the specialized databases. In the paper, the process of simulation of the signal transduction in bio-nanoprocesses using the distributed database environment is presented. Selected biological examples illustrate the complexity of the analysis process. The paper shows the analysis of the cascades' fusions processes with the use of the Petri nets, conformation switching basing on the molecular mechanics approach and similarity searching using the approximate retrieval methods.

AB - Signal transduction executed in the signal cascades is the common term used to define a divers biochemical mechanisms that regulate processes in the nanonetworks. The signal cascades existing in the different type of cells (for selected processes) can be retrieved from the biochemical research available in the specialized databases. In the paper, the process of simulation of the signal transduction in bio-nanoprocesses using the distributed database environment is presented. Selected biological examples illustrate the complexity of the analysis process. The paper shows the analysis of the cascades' fusions processes with the use of the Petri nets, conformation switching basing on the molecular mechanics approach and similarity searching using the approximate retrieval methods.

KW - Distributed databases

KW - Molecular nanotechnology

KW - Signal transduction

UR - https://www.scopus.com/pages/publications/33751219255

M3 - Conference contribution

AN - SCOPUS:33751219255

SN - 0889865264

SN - 9780889865266

T3 - Proceedings of the IASTED International Conference on Modelling, Simulation, and Optimization

SP - 17

EP - 22

BT - Proceedings of the Fifth IASTED International Conference on Modelling, Simulation, and Optimization

T2 - 5th IASTED International Conference on Modelling, Simulation, and Optimization

Y2 - 29 August 2005 through 31 August 2005

ER -

Signal transduction simulation in nanoprocesses using distributed database environment

Abstract

Publication series

Conference

Keywords

ASJC Scopus subject areas

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