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Segmenting Brain Tumors from MRI Using Cascaded 3D U-Nets

  • Krzysztof Kotowski
  • , Szymon Adamski
  • , Wojciech Malara
  • , Bartosz Machura
  • , Lukasz Zarudzki
  • , Jakub Nalepa
  • Future Processing
  • Maria Sklodowska-Curie Institute of Oncology

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

10 Citations (Scopus)

Abstract

In this paper, we exploit a cascaded 3D U-Net architecture to perform detection and segmentation of brain tumors (low- and high-grade gliomas) from multi-modal magnetic resonance scans. First, we detect tumors in a binary-classification setting, and they later undergo multi-class segmentation. To provide high-quality generalization, we investigate several regularization techniques that help improve the segmentation performance obtained for the unseen scans, and benefit from the expert knowledge of a senior radiologist captured in a form of several post-processing routines. Our preliminary experiments elaborated over the BraTS’20 validation set revealed that our approach delivers high-quality tumor delineation.

Original languageEnglish
Title of host publicationBrainlesion
Subtitle of host publicationGlioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 6th International Workshop, BrainLes 2020, Held in Conjunction with MICCAI 2020, Revised Selected Papers
EditorsAlessandro Crimi, Spyridon Bakas
PublisherSpringer Science and Business Media Deutschland GmbH
Pages265-277
Number of pages13
ISBN (Print)9783030720865
DOIs
Publication statusPublished - 2021
Event6th International MICCAI Brainlesion Workshop, BrainLes 2020 Held in Conjunction with 23rd Medical Image Computing for Computer Assisted Intervention Conference, MICCAI 2020 - Virtual, Online
Duration: 4 Oct 20204 Oct 2020

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume12659 LNCS
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

Conference6th International MICCAI Brainlesion Workshop, BrainLes 2020 Held in Conjunction with 23rd Medical Image Computing for Computer Assisted Intervention Conference, MICCAI 2020
CityVirtual, Online
Period4/10/204/10/20

Keywords

  • Brain tumor
  • Deep learning
  • Segmentation
  • U-Net

ASJC Scopus subject areas

  • Theoretical Computer Science
  • General Computer Science

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