TY - GEN
T1 - Improvements in DNA reads correction
AU - Długosz, Maciej
AU - Deorowicz, Sebastian
AU - Kokot, Marek
N1 - Publisher Copyright:
© 2018, Springer International Publishing AG.
PY - 2018
Y1 - 2018
N2 - We introduce an improved version of RECKONER, an error corrector for Illumina whole genome sequencing data. By modifying its workflow we reduce the computation time even 10 times. We also propose a new method of determination of k-mer length, the key parameter of k-spectrum-based family of correctors. The correction algorithms are examined on huge data sets, i.e., human and maize genomes for both Illumina HiSeq and MiSeq instruments.
AB - We introduce an improved version of RECKONER, an error corrector for Illumina whole genome sequencing data. By modifying its workflow we reduce the computation time even 10 times. We also propose a new method of determination of k-mer length, the key parameter of k-spectrum-based family of correctors. The correction algorithms are examined on huge data sets, i.e., human and maize genomes for both Illumina HiSeq and MiSeq instruments.
KW - Algorithm parallelization
KW - High-throughput sequencing
KW - Read error correction
KW - Sequencing reads simulation
UR - https://www.scopus.com/pages/publications/85030758026
U2 - 10.1007/978-3-319-67792-7_12
DO - 10.1007/978-3-319-67792-7_12
M3 - Conference contribution
AN - SCOPUS:85030758026
SN - 9783319677910
T3 - Advances in Intelligent Systems and Computing
SP - 115
EP - 124
BT - Man-Machine Interactions 5 - 5th International Conference on Man-Machine Interactions, ICMMI 2017
A2 - Gruca, Aleksandra
A2 - Czachorski, Tadeusz
A2 - Harezlak, Katarzyna
A2 - Kozielski, Stanislaw
A2 - Piotrowska, Agnieszka
A2 - Czachorski, Tadeusz
PB - Springer Verlag
T2 - 5th International Conference on Man-Machine Interactions, ICMMI 2017
Y2 - 3 October 2017 through 6 October 2017
ER -