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Human fibroblast growth factor 2 hot spot analysis by means of time-frequency transforms

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

3 Citations (Scopus)

Abstract

Energy in protein complexes is not uniformly distributed. Some of amino acid residues—called hot spots—contribute most to the total energy of interaction. Hot spots can be determined experimentally or by computational methods. Here we present the application of time-frequency tools such as short-time Fourier transform and S transform to analyze human fibroblast growth factor 2 protein. The timefrequency tools take advantage the Resonant Recognition Model (RRM), which is based on the correlation between spectra of numerical representations of amino acids and their function. Thus, RRM allows for applying digital signal processing tools to amino acid analysis. Methods using time-frequency transforms do not require knowledge of protein structure, thus they help to predict hot spot residues with good accuracy and lower computational requirements comparing to other algorithms.

Original languageEnglish
Title of host publicationInformation Technologies in Medicine - 5th International Conference, ITIB 2016, Proceedings
EditorsEwa Piętka, Pawel Badura, Jacek Kawa, Wojciech Wieclawek
PublisherSpringer Verlag
Pages147-159
Number of pages13
ISBN (Print)9783319399034
DOIs
Publication statusPublished - 2016
Event5th International Conference on Information Technologies in Biomedicine, ITIB 2016 - Kamien Slaski, Poland
Duration: 20 Jun 201622 Jun 2016

Publication series

NameAdvances in Intelligent Systems and Computing
Volume472
ISSN (Print)2194-5357

Conference

Conference5th International Conference on Information Technologies in Biomedicine, ITIB 2016
Country/TerritoryPoland
CityKamien Slaski
Period20/06/1622/06/16

Keywords

  • Fibroblast growth factor
  • Hot spot
  • Resonant recognition model
  • S transform
  • Short-time Fourier transform

ASJC Scopus subject areas

  • Control and Systems Engineering
  • General Computer Science

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