@inproceedings{379ac38a3d8743579bd9c119b5ac4804,
title = "Efficient algorithm for microarray probes re-annotation",
abstract = "Systems for re-annotations of DNA microarray data for supporting analysis of results of DNA microarray experiments are becoming important elements of bioinformatics aspects of gene expression based studies [10]. However, due to the computational problems related to the whole genome browsing projects, available services and data for re-annotation of microarray probes are still quite sparse. The difficulty in developing systems of re-annotations of microarray probe sets is mainly in huge sizes of probe set data. In our research we have created an efficient re-annotation method by combining the well known gene search tool BLAT with appropriately designed database. The elaborated system extends possibilities of existing re-annotation tools in the sense that: (1) by tuning parameters of all steps of re-annotation procedure any Affymetrix microarray standard chip can be automatically re-annotated in few hours, (2) several Affymetrix microarray chip standards are already precomputed.",
keywords = "affymetrix, classification, expression data, microarrays, re-annotation",
author = "Pawel Foszner and Aleksandra Gruca and Andrzej Polanski and Michal Marczyk and Roman Jaksik and Joanna Polanska",
year = "2011",
doi = "10.1007/978-3-642-23938-0\_29",
language = "English",
isbn = "9783642239373",
series = "Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)",
number = "PART 2",
pages = "281--289",
booktitle = "Computational Collective Intelligence",
edition = "PART 2",
note = "3rd International Conference on Computational Collective Intelligence, ICCCI 2011 ; Conference date: 21-09-2011 Through 23-09-2011",
}